Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37928.1Conserved hypothetical protein. (709 aa)    
Predicted Functional Partners:
EFL40607.1
Pectinesterase/pectate lyase protein.
     
 0.702
EFL42491.1
Chitinase 63; Belongs to the glycosyl hydrolase 18 family.
  
 0.626
nadE
phenylalanyl-tRNA synthetase, beta subunit; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
  0.599
EFL40155.1
Lipoprotein.
  
    0.595
EFL37669.1
Conserved hypothetical protein.
  
    0.558
EFL39905.1
RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.534
EFL43514.1
Peptidase M52, hydrogen uptake protein.
  
 
   0.519
EFL42654.1
Conserved hypothetical protein.
  
     0.504
EFL38286.1
Hypothetical protein.
   
    0.501
EFL38526.1
EmrB/QacA family drug resistance transporter; Belongs to the major facilitator superfamily.
   
    0.501
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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