Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EFL37960.1TatD family hydrolase. (283 aa)    
Predicted Functional Partners:
EFL37958.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
 
   
 0.972
EFL37959.1
AP endonuclease, family 2.
 
  
 0.971
EFL37957.1
Tat (twin-arginine translocation) pathway signal sequence domain-containing protein.
 
  
 0.931
EFL37961.1
Isomerase.
 
  
 0.889
EFL37865.1
crp/Fnr family transcriptional regulator.
 
     0.878
EFL37963.1
crp/Fnr family transcriptional regulator.
 
     0.876
EFL37962.1
Inositol-3-phosphate synthase.
 
     0.856
EFL43246.1
crp/Fnr family transcriptional regulator.
 
     0.809
EFL38290.1
Sigma-70 factor; Truncated CDS; unextendable partial coding region.
 
     0.739
EFL37866.1
Glycosyl hydrolase.
  
     0.735
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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