STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38010.1Gas vesicle protein. (259 aa)    
Predicted Functional Partners:
EFL38009.1
Gas vesicle synthesis protein.
 
   
 0.974
EFL38011.1
Gas vesicle protein J; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.974
EFL38008.1
Gas vesicle protein K.
 
   
 0.973
gvpA
Gas vesicle structural protein (GVP); Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.972
EFL38014.1
Gas vesicle protein G.
 
   
 0.969
EFL38013.1
Conserved hypothetical protein.
 
     0.958
EFL38017.1
Gas vesicle synthesis protein.
 
   
 0.958
EFL38012.1
Cyclase/dehydrase; Truncated CDS.
 
     0.946
EFL38015.1
Gas vesicle synthesis protein.
 
   
0.912
EFL38018.1
DNA polymerase LigD, polymerase domain-containing protein.
       0.718
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.