Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38025.1LD-carboxypeptidase superfamily protein. (310 aa)    
Predicted Functional Partners:
EFL38026.1
S9C (acylaminoacyl-peptidase) family peptidase.
       0.878
EFL38027.1
Peptidase family M20/M25/M40 protein.
       0.878
EFL38024.1
Acetyltransferase.
       0.817
EFL38040.1
methylmalonyl-CoA mutase.
     
  0.746
EFL38537.1
Ferredoxin oxidoreductase, alpha subunit.
    
 0.713
EFL39776.1
Ferredoxin oxidoreductase, alpha subunit.
    
 0.713
EFL38023.1
Tetratricopeptide repeat family protein.
  
    0.615
EFL42213.1
YzbB.
  
     0.585
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.552
EFL37708.1
Beta-lactamase.
 
     0.539
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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