STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38025.1LD-carboxypeptidase superfamily protein. (310 aa)    
Predicted Functional Partners:
EFL38026.1
S9C (acylaminoacyl-peptidase) family peptidase.
       0.870
EFL38027.1
Peptidase family M20/M25/M40 protein.
       0.870
EFL38024.1
Acetyltransferase.
       0.818
EFL38537.1
Ferredoxin oxidoreductase, alpha subunit.
    
  0.728
EFL39776.1
Ferredoxin oxidoreductase, alpha subunit.
    
  0.728
EFL38023.1
Tetratricopeptide repeat family protein.
  
    0.624
EFL42213.1
YzbB.
  
     0.585
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.572
EFL37708.1
Beta-lactamase.
 
     0.538
EFL41278.1
Citrate (Si)-synthase; Belongs to the citrate synthase family.
  
  
  0.529
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.