Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38104.1Secreted protein. (187 aa)    
Predicted Functional Partners:
EFL38106.1
Tail lysozyme.
 
 
 0.999
EFL38112.1
Phage tail sheath protein.
 
 
 0.997
EFL38105.1
Conserved hypothetical protein.
 
 
 0.996
EFL38108.1
LysM domain-containing protein.
 
 
 0.990
EFL38109.1
Conserved hypothetical protein.
 
 
   0.987
EFL38103.1
Membrane protein.
 
   
 0.986
EFL38111.1
Conserved hypothetical protein.
 
 
   0.958
EFL38107.1
Rhs element Vgr protein.
 
     0.945
EFL38115.1
Conserved hypothetical protein.
 
   
 0.870
EFL41621.1
Translation initiation factor IF-2.
  
 
 0.825
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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