Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38105.1Conserved hypothetical protein. (652 aa)    
Predicted Functional Partners:
EFL38106.1
Tail lysozyme.
 
 
 0.998
EFL38104.1
Secreted protein.
 
 
 0.996
EFL38112.1
Phage tail sheath protein.
 
 
 0.993
EFL38108.1
LysM domain-containing protein.
 
 
 0.992
EFL38109.1
Conserved hypothetical protein.
 
 
 
 0.989
EFL38103.1
Membrane protein.
 
     0.971
EFL38111.1
Conserved hypothetical protein.
 
 
 
 0.966
EFL38107.1
Rhs element Vgr protein.
 
   
 0.947
EFL41621.1
Translation initiation factor IF-2.
  
 
 0.873
EFL38114.1
AAA family ATPase.
 
     0.807
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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