Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38108.1LysM domain-containing protein. (243 aa)    
Predicted Functional Partners:
EFL38109.1
Conserved hypothetical protein.
 
   0.993
EFL38105.1
Conserved hypothetical protein.
 
 
 0.992
EFL38106.1
Tail lysozyme.
 
 
 0.992
EFL38104.1
Secreted protein.
 
 
 0.990
EFL38112.1
Phage tail sheath protein.
 
 
 0.989
EFL38107.1
Rhs element Vgr protein.
 
    0.973
EFL38111.1
Conserved hypothetical protein.
 
   0.959
EFL38103.1
Membrane protein.
 
     0.945
EFL38114.1
AAA family ATPase.
 
     0.874
EFL38115.1
Conserved hypothetical protein.
 
   
 0.796
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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