Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38113.1Hydrolytic protein. (453 aa)    
Predicted Functional Partners:
EFL38112.1
Phage tail sheath protein.
 
   
 0.935
EFL38111.1
Conserved hypothetical protein.
 
   
 0.865
EFL38115.1
Conserved hypothetical protein.
 
   
 0.821
EFL38104.1
Secreted protein.
 
   
 0.819
EFL38103.1
Membrane protein.
 
   
 0.816
EFL38107.1
Rhs element Vgr protein.
 
   
 0.801
EFL38106.1
Tail lysozyme.
 
   
 0.789
EFL40607.1
Pectinesterase/pectate lyase protein.
     
  0.789
EFL38105.1
Conserved hypothetical protein.
 
     0.782
EFL38109.1
Conserved hypothetical protein.
 
     0.780
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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