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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38134.1Deoxyribodipyrimidine photolyase. (498 aa)    
Predicted Functional Partners:
EFL38133.1
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
   
 0.921
EFL38132.1
Helix-loop-helix' dimerization domain signature protein.
       0.698
EFL38136.1
Phytoene desaturase.
 
     0.692
EFL43265.1
Conserved hypothetical protein.
 
     0.596
EFL41737.1
Oxidoreductase.
     0.573
EFL38135.1
Polyprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.560
EFL43429.1
Conserved hypothetical protein.
  
    0.506
EFL38523.1
Amine oxidase, flavin-containing.
 
   
 0.491
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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