STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38136.1Phytoene desaturase. (489 aa)    
Predicted Functional Partners:
EFL38140.1
Lycopene cyclase.
 
 
 0.985
EFL37827.1
Squalene synthase HpnD.
 
 
 0.979
EFL38135.1
Polyprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.923
EFL38138.1
Dehydrogenase.
 
  
 0.890
EFL37828.1
Squalene synthase HpnC.
 
 
 0.836
EFL38133.1
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
  
 0.687
EFL38134.1
Deoxyribodipyrimidine photolyase.
 
     0.684
EFL38189.1
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.673
EFL38139.1
CrtT protein.
 
 
 0.644
EFL42076.1
Magnesium chelatase.
 
 
 0.632
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.