Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL38138.1Dehydrogenase. (528 aa)    
Predicted Functional Partners:
EFL38140.1
Lycopene cyclase.
 
  
 0.993
EFL38139.1
CrtT protein.
  
 0.987
EFL38136.1
Phytoene desaturase.
 
  
 0.890
EFL37827.1
Squalene synthase HpnD.
 
  
 0.719
EFL37828.1
Squalene synthase HpnC.
 
  
 0.704
EFL41886.1
Tryptophan synthase subunit alpha; Belongs to the TrpA family.
     
 0.599
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
  0.597
EFL37251.1
Vegetative cell wall protein gp1.
     
 0.577
EFL37769.1
Delta 6 fatty acid desaturase.
     
 0.577
EFL41646.1
FAD dependent oxidoreductase.
    
 0.531
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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