Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL38218.1Hydroxypyruvate isomerase; Belongs to the hyi family. (279 aa)    
Predicted Functional Partners:
EFL38219.1
2-hydroxy-3-oxopropionate reductase.
 
 0.994
EFL38222.1
Glyoxylate carboligase; Belongs to the TPP enzyme family.
 
 
 0.977
EFL40101.1
D-amino acid oxidase.
  
  
  0.833
EFL37845.1
D-amino acid oxidase.
  
  
  0.811
EFL42060.1
Aspartate aminotransferase.
     
  0.776
EFL42538.1
6-phosphogluconate dehydrogenase, NAD-binding.
 
 
 0.772
EFL38496.1
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase.
     
  0.767
EFL38216.1
DNA-binding protein.
       0.749
EFL38217.1
Conserved hypothetical protein.
       0.749
EFL37961.1
Isomerase.
    
  0.726
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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