STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38260.1Conserved hypothetical protein; Truncated CDS; unextendable partial coding region. (254 aa)    
Predicted Functional Partners:
EFL38262.1
alpha-N-arabinofuranosidase 2; Belongs to the glycosyl hydrolase 43 family.
 
     0.941
EFL40607.1
Pectinesterase/pectate lyase protein.
 
  
 0.905
EFL38261.1
Conserved hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.891
EFL42401.1
Hypothetical protein.
 
 
  0.884
EFL42040.1
Secreted pectinesterase.
  
 0.868
EFL42036.1
Xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.772
EFL38800.1
Conserved hypothetical protein.
  
 
   0.761
EFL37987.1
FG-GAP repeat domain-containing protein.
  
 
  0.755
EFL41514.1
Glycoside Hydrolase family 43.
  
     0.752
EFL42917.1
Endo-1,4-beta-xylanase Z.
 
 
 0.745
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.