Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL38272.1LuxR-family transcriptional regulator. (892 aa)    
Predicted Functional Partners:
EFL38271.1
Transmembrane efflux protein.
 
     0.888
EFL38270.1
Integral membrane protein.
       0.869
EFL38269.1
Conserved hypothetical protein.
       0.752
EFL39616.1
GMP synthase.
     
  0.602
EFL39617.1
GMP synthase domain-containing protein.
     
  0.602
EFL38273.1
Homocysteine S-methyltransferase.
       0.574
EFL37743.1
Conserved hypothetical protein; Belongs to the small heat shock protein (HSP20) family.
    
   0.526
EFL43460.1
Heat shock protein; Belongs to the small heat shock protein (HSP20) family.
    
   0.526
EFL38249.1
Radical SAM family Fe-S protein.
  
     0.429
EFL42833.1
Membrane protein.
 
     0.425
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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