Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38290.1Sigma-70 factor; Truncated CDS; unextendable partial coding region. (183 aa)    
Predicted Functional Partners:
EFL43246.1
crp/Fnr family transcriptional regulator.
  
  0.990
EFL37958.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
 
     0.743
EFL37960.1
TatD family hydrolase.
 
     0.739
EFL37865.1
crp/Fnr family transcriptional regulator.
  
  
 
0.712
EFL37959.1
AP endonuclease, family 2.
 
     0.706
EFL37963.1
crp/Fnr family transcriptional regulator.
    
  0.692
EFL37866.1
Glycosyl hydrolase.
  
     0.619
EFL41711.1
Alpha-amylase.
   
    0.603
EFL38291.1
Quinone binding protein.
       0.564
EFL37957.1
Tat (twin-arginine translocation) pathway signal sequence domain-containing protein.
 
     0.546
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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