STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38320.13-hydroxyacyl-CoA dehydrogenase; Unextendable partial coding region. (418 aa)    
Predicted Functional Partners:
EFL38228.1
Trypsin (SET).
   
 0.829
EFL38693.1
Trypsin (SET).
   
 0.829
EFL40282.1
Extracellular small neutral protease; Belongs to the peptidase M7 family.
   
 0.829
EFL43123.1
Extracellular small neutral protease.
   
 0.829
EFL38319.1
Subtilisin inhibitor (SSI type); Belongs to the protease inhibitor I16 (SSI) family.
       0.809
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
   
 
  0.665
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
  0.598
EFL38321.1
FHA domain-containing protein.
       0.527
EFL38279.1
Hypothetical protein.
   
  0.517
EFL39435.1
Conserved hypothetical protein.
   
  0.517
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.