STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38338.1AP endonuclease, family 2. (267 aa)    
Predicted Functional Partners:
EFL38337.1
Oxidoreductase.
 
  
  0.974
EFL38340.1
Ribose 5-phosphate isomerase.
 
   
 0.930
EFL38339.1
Triosephosphate isomerase.
 
   
 0.923
EFL38342.1
Tartrate transporter.
 
    0.757
EFL42839.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
  
 
 0.754
EFL38555.1
Oxidoreductase.
  
 
 0.651
EFL38429.1
L-fuculose phosphate aldolase.
  
 
  0.632
EFL42081.1
L-fuculose phosphate aldolase.
  
 
  0.632
EFL42840.1
IolB.
  
  
 0.619
EFL40863.1
PTS system, fructose-specific family, IIABC component.
  
 
  0.618
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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