Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL38358.1Conserved hypothetical protein. (157 aa)    
Predicted Functional Partners:
murC
UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
       0.782
EFL38356.1
methionine-R-sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
       0.775
EFL38359.1
5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin biosynthesis protein RibD); Truncated CDS.
       0.728
EFL38360.1
ATPase, AFG1 family protein.
 
     0.728
EFL41368.1
Membrane protein.
  
     0.692
EFL40327.1
Membrane protein; Overlaps another CDS with the same product name.
  
     0.622
EFL37993.1
Peroxiredoxin OsmC (Osmotically-inducible protein C).
 
     0.606
EFL40173.1
Conserved hypothetical protein.
  
     0.602
EFL42502.1
Membrane protein.
  
     0.587
EFL39575.1
2',5' RNA ligase; Unextendable partial coding region.
  
     0.582
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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