STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38360.1ATPase, AFG1 family protein. (367 aa)    
Predicted Functional Partners:
EFL39560.1
Succinate dehydrogenase, cytochrome b556 subunit.
 
   
 0.837
EFL39561.1
Succinate dehydrogenase, hydrophobic membrane anchor protein.
 
     0.795
EFL38359.1
5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin biosynthesis protein RibD); Truncated CDS.
       0.787
EFL42450.1
Integral membrane protein.
  
    0.787
EFL39563.1
Succinate dehydrogenase, iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
    0.782
EFL38766.1
Tetratricopeptide repeat domain-containing protein.
  
     0.774
EFL42298.1
Conserved hypothetical protein.
  
     0.774
EFL39562.1
Succinate dehydrogenase, flavoprotein subunit.
 
    0.769
EFL38358.1
Conserved hypothetical protein.
 
     0.728
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
   0.709
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.