STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38367.1Polysaccharide deacetylase. (281 aa)    
Predicted Functional Partners:
EFL38368.1
Conserved hypothetical protein.
       0.838
EFL38366.1
Rieske family iron-sulfur cluster-binding protein.
 
     0.808
EFL38369.1
Conserved hypothetical protein.
       0.796
EFL39646.1
Polysaccharide deacetylase.
  
     0.695
EFL38371.1
AP endonuclease, family 2.
       0.630
EFL39645.1
Secreted protein.
  
     0.597
EFL42491.1
Chitinase 63; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.571
EFL38360.1
ATPase, AFG1 family protein.
       0.552
EFL38363.1
SPFH domain/band 7 family domain-containing protein.
       0.552
EFL38359.1
5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin biosynthesis protein RibD); Truncated CDS.
       0.535
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.