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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38390.1Sugar transport system permease; Overlaps another CDS with the same product name. (276 aa)    
Predicted Functional Partners:
EFL38392.1
Sugar transport system sugar-binding lipoprotein c.
 
 0.998
EFL38391.1
Sugar transport system permease; Overlaps another CDS with the same product name.
 
 0.988
EFL42203.1
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.984
EFL40676.1
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.981
EFL42825.1
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.968
EFL42882.1
ABC transporter, permease.
 
 0.952
EFL38803.1
Transmembrane lipoprotein LplB.
 
 0.940
EFL38410.1
ABC-type sugar transport system, permease component.
 
 0.938
EFL41492.1
Sugar transporter membrane protein.
 
 0.912
EFL43203.1
Sugar ABC transporter, permease.
 
 0.911
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.