Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38393.1Beta-mannosidase. (793 aa)    
Predicted Functional Partners:
EFL38394.1
Regulatory protein, LacI.
 
     0.897
EFL41897.1
Chitosanase; Aids in the defense against invading fungal pathogens by degrading their cell wall chitosan.
     
 0.850
EFL38392.1
Sugar transport system sugar-binding lipoprotein c.
 
     0.835
EFL38395.1
Beta-ketoadipyl CoA thiolase PhaD; Belongs to the thiolase-like superfamily. Thiolase family.
       0.739
EFL38396.1
Fatty acid oxidation complex alpha-subunit.
       0.739
EFL38391.1
Sugar transport system permease; Overlaps another CDS with the same product name.
 
    0.735
EFL38390.1
Sugar transport system permease; Overlaps another CDS with the same product name.
       0.698
EFL42917.1
Endo-1,4-beta-xylanase Z.
 
  
  0.651
EFL38801.1
Beta-galactosidase 1; Unextendable partial coding region.
 
 
 0.638
EFL37774.1
Beta-galactosidase; Truncated CDS.
 
 
 0.632
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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