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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38412.1Alpha-1,2-mannosidase. (1023 aa)    
Predicted Functional Partners:
EFL38411.1
Extracellular solute-binding domain-containing protein.
     
 0.786
EFL38410.1
ABC-type sugar transport system, permease component.
     
 0.766
EFL38409.1
ABC-type sugar transport system, permease component.
     
 0.764
EFL37855.1
Oxidoreductase; Unextendable partial coding region.
  
     0.577
EFL37691.1
Conserved hypothetical protein; Truncated CDS.
  
     0.558
EFL42820.1
Transketolase.
  
  
  0.503
EFL43193.1
Glycosyl hydrolase, family 2; Belongs to the glycosyl hydrolase 2 family.
 
     0.475
EFL41109.1
beta-N-acetylhexosaminidase.
 
   
 0.459
EFL37426.1
Integral membrane protein.
  
     0.458
EFL38408.1
ROK family transcriptional regulator.
     
 0.458
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.