STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38428.1Type III effector HopAN1. (424 aa)    
Predicted Functional Partners:
EFL38429.1
L-fuculose phosphate aldolase.
  
 0.989
EFL38425.1
Asp/Glu racemase.
 
     0.868
EFL38427.1
3-isopropylmalate dehydrogenase.
 
     0.671
EFL38430.1
Conserved hypothetical protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
       0.624
EFL38431.1
Integral membrane protein.
       0.618
EFL38432.1
SMI1/KNR4 family protein.
       0.618
EFL42081.1
L-fuculose phosphate aldolase.
 
  
 0.586
EFL38498.1
Pyridoxal phosphate biosynthetic protein PdxA; Belongs to the PdxA family.
 
     0.545
EFL38218.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.496
EFL38426.1
Translation initiation factor IF-2.
       0.475
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
Server load: low (30%) [HD]