STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38432.1SMI1/KNR4 family protein. (635 aa)    
Predicted Functional Partners:
EFL38430.1
Conserved hypothetical protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
  
    0.773
EFL38431.1
Integral membrane protein.
       0.773
EFL39748.1
Conserved hypothetical protein.
  
     0.764
EFL40306.1
DNA-binding protein.
 
   
 0.754
EFL39064.1
Conserved hypothetical protein.
  
     0.748
EFL43153.1
DNA-binding protein.
  
     0.729
EFL40094.1
Conserved hypothetical protein.
  
     0.709
EFL43244.1
Conserved hypothetical protein.
  
     0.625
EFL38428.1
Type III effector HopAN1.
       0.618
EFL38429.1
L-fuculose phosphate aldolase.
       0.618
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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