Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38455.1Secreted hydrolase. (264 aa)    
Predicted Functional Partners:
EFL40607.1
Pectinesterase/pectate lyase protein.
    
 0.627
EFL41510.1
Membrane protein.
  
     0.458
EFL41496.1
Conserved hypothetical protein.
  
     0.452
EFL41512.1
Integral membrane protein.
  
     0.450
EFL38456.1
Large glycine/alanine rich protein.
       0.444
EFL43086.1
Glycosyl hydrolase.
  
 
  0.439
EFL37930.1
Secreted protein.
     
 0.435
EFL43152.1
Glucan endo-1,3-beta-glucosidase.
  
 
  0.433
EFL40829.1
Conserved hypothetical protein.
  
     0.425
EFL39383.1
Integral membrane protein.
 
 
   0.423
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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