STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38463.1Transcriptional repressor for phenylacetic acid degradation; Unextendable partial coding region. (271 aa)    
Predicted Functional Partners:
EFL38462.1
Benzoate-coenzyme A ligase.
 
     0.902
EFL38460.1
Endoribonuclease L-PSP family protein.
 
     0.849
EFL38461.1
acyl-CoA dehydrogenase.
 
     0.765
EFL38049.1
NAD-dependent deacetylase 2.
   
    0.618
cobB-2
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.618
EFL43278.1
phenylacetate-CoA oxygenase, PaaJ subunit.
 
   
 0.526
EFL40330.1
phenylacetate-CoA oxygenase, PaaJ subunit.
 
   
 0.525
EFL38465.1
anthraniloyl-CoA monooxygenase.
 
     0.516
EFL43276.1
phenylacetate-CoA oxygenase, PaaH subunit.
 
   
 0.469
EFL43275.1
phenylacetate-CoA oxygenase, PaaG subunit.
 
   
 0.466
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.