Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFL38475.1Serine/threonine protein phosphatase. (563 aa)    
Predicted Functional Partners:
EFL38476.1
Methyltransferase type 12.
 
 
   0.919
EFL38477.1
Conserved hypothetical protein.
 
 
   0.919
EFL41750.1
Methyltransferase type 12.
 
 
   0.664
EFL37460.1
Methyltransferase.
 
 
   0.649
EFL39542.1
Conserved hypothetical protein.
   
   0.607
EFL37328.1
Methyltransferase.
   
   0.603
EFL38560.1
Methyltransferase.
   
   0.603
EFL41753.1
Methyltransferase.
   
   0.603
EFL41925.1
Methyltransferase domain-containing protein.
   
   0.603
EFL43069.1
Methyltransferase type 12.
   
   0.603
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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