STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38489.1phytanoyl-CoA dioxygenase (PhyH) superfamily protein. (341 aa)    
Predicted Functional Partners:
EFL38492.1
GNAT family acetyltransferase.
 
     0.938
EFL38493.1
Conserved hypothetical protein.
 
     0.926
EFL38491.1
Lysine/ornithine decarboxylase; Unextendable partial coding region; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.883
EFL38490.1
Conserved hypothetical protein.
       0.878
EFL38484.1
Sugar hydrolase.
       0.609
EFL38485.1
Sugar transporter integral membrane protein; Overlaps another CDS with the same product name.
       0.539
EFL38486.1
Sugar transporter integral membrane protein; Overlaps another CDS with the same product name.
       0.539
EFL38488.1
Transcriptional regulator, GntR-family.
  
    0.478
EFL41895.1
Glutamate synthase large subunit.
      
 0.472
EFL38250.1
Sorbitol oxidase.
  
  0.463
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.