Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL38504.1Sarcosine oxidase. (380 aa)    
Predicted Functional Partners:
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.930
EFL41895.1
Glutamate synthase large subunit.
  
 
 0.890
EFL37250.1
Inosamine-phosphate amidinotransferase 1; Unextendable partial coding region.
  
  
  0.867
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
    
 0.854
EFL39991.1
L-allo-threonine aldolase.
     
 0.850
EFL42731.1
Threonine aldolase, low-specificity.
     
 0.850
EFL42060.1
Aspartate aminotransferase.
 
 
 0.839
EFL37845.1
D-amino acid oxidase.
     
  0.772
EFL40101.1
D-amino acid oxidase.
     
  0.772
EFL37332.1
DNA-binding protein.
  
  
  0.768
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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