STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38540.1GNAT family acetyltransferase. (181 aa)    
Predicted Functional Partners:
EFL38542.1
Conserved hypothetical protein.
 
     0.793
EFL38541.1
ATP-grasp domain-containing protein.
 
     0.776
EFL40670.1
YgbB family protein; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
    
  0.713
EFL38543.1
Cysteine synthase; Truncated CDS.
 
     0.648
EFL37449.1
Conserved hypothetical protein.
 
  
  0.507
EFL38975.1
Conserved hypothetical protein.
  
     0.506
EFL38545.1
Conserved hypothetical protein.
 
     0.498
EFL39440.1
Toxin-antitoxin system, toxin component.
  
     0.498
EFL38544.1
Transmembrane efflux protein (MFS).
 
     0.487
EFL38276.1
Toxin-antitoxin system, toxin component.
  
     0.475
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.