Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL38555.1Oxidoreductase. (725 aa)    
Predicted Functional Partners:
EFL38556.1
Conserved hypothetical protein.
 
     0.942
EFL38550.1
GDP-mannose 6-dehydrogenase AlgD; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
  0.905
EFL38554.1
Asparagine synthase.
 
     0.877
EFL40331.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
  
 
 0.875
EFL43279.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
  
 
 0.875
EFL38567.1
Membrane protein.
 
     0.872
EFL38565.1
Membrane protein.
 
    0.867
EFL38557.1
Conserved hypothetical protein.
 
     0.860
EFL38559.1
Transferase.
 
  
 0.838
EFL38566.1
Glycosyl transferase.
 
   
 0.821
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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