STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38570.1PAP2 family protein. (228 aa)    
Predicted Functional Partners:
EFL38567.1
Membrane protein.
 
     0.764
EFL38559.1
Transferase.
  
 
  0.756
EFL38557.1
Conserved hypothetical protein.
  
     0.751
EFL38556.1
Conserved hypothetical protein.
  
     0.748
EFL38565.1
Membrane protein.
 
  
 0.717
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.671
EFL38549.1
Glucosyltransferase.
 
 
 0.652
EFL38566.1
Glycosyl transferase.
  
  
  0.633
EFL37503.1
PE-PGRS family protein; Belongs to the V-ATPase 116 kDa subunit family.
    
   0.630
EFL40923.1
Membrane protein.
  
     0.615
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.