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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38587.1Short-chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa)    
Predicted Functional Partners:
EFL37539.1
Condensation domain-containing protein; Unextendable partial coding region.
  
 
 0.912
EFL37540.1
Condensation domain-containing protein.
  
 
 0.912
EFL41640.1
Dimodular nonribosomal peptide synthetase; Truncated CDS; Belongs to the ATP-dependent AMP-binding enzyme family.
 
      0.892
EFL41641.1
Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.872
EFL43486.1
Non-ribosomal peptide synthetase/polyketide synthase Ta1; Truncated CDS; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.833
EFL43484.1
Polyketide synthase.
  
 
 0.827
EFL37383.1
Amino acid adenylation.
 
      0.798
EFL37388.1
Linear gramicidin synthetase LgrD.
 
    0.791
EFL43503.1
Polyketide synthase type I.
  
 
 0.772
EFL38586.1
Transcriptional regulator.
       0.760
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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