Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38593.1ABC transporter, ATP-binding protein. (229 aa)    
Predicted Functional Partners:
EFL38592.1
Conserved hypothetical protein.
 0.995
EFL38594.1
Translation initiation factor IF-2.
 
     0.887
EFL40951.1
ABC lipoprotein transporter, permease component.
 
  0.792
EFL41980.1
Integral membrane.
  
  0.756
EFL42613.1
ABC transporter integral membrane protein.
  
  0.756
EFL38796.1
ABC transporter, permease.
  
 0.755
EFL39488.1
Integral membrane protein.
 
 0.746
EFL38635.1
Ferric citrate transport system ATP-binding protein.
 
     0.731
EFL38595.1
Hypothetical protein.
       0.715
EFL40341.1
Integral membrane protein.
  
  0.704
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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