STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38642.1Trk-type K+ transport system, NAD-binding component; Overlaps another CDS with the same product name. (223 aa)    
Predicted Functional Partners:
EFL38643.1
Trk-type K+ transport system, NAD-binding component; Overlaps another CDS with the same product name.
 
  
0.922
EFL38640.1
Amino acid permease.
 
     0.870
EFL42462.1
Conserved hypothetical protein; Truncated CDS.
  
   0.707
EFL38645.1
Nucleic acid binding, OB-fold, tRNA/helicase-type.
  
     0.677
EFL38639.1
tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.646
EFL39237.1
Molybdopterin converting factor, subunit 2.
   
    0.629
EFL41096.1
uroporphyrinogen-III synthase.
 
    0.621
nadE
phenylalanyl-tRNA synthetase, beta subunit; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.603
EFL39938.1
uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase.
  
    0.573
EFL38641.1
Sugar kinase.
       0.554
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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