STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38648.1ABC transporter, ATP-binding protein. (230 aa)    
Predicted Functional Partners:
EFL41317.1
Membrane protein.
 
  0.912
EFL38592.1
Conserved hypothetical protein.
 0.897
EFL40951.1
ABC lipoprotein transporter, permease component.
 
  0.807
EFL41316.1
Membrane protein.
 
  0.807
EFL38647.1
Sensor histidine kinase KdpD.
       0.757
EFL41980.1
Integral membrane.
  
  0.756
EFL42613.1
ABC transporter integral membrane protein.
  
  0.756
EFL38796.1
ABC transporter, permease.
  
 0.755
EFL38635.1
Ferric citrate transport system ATP-binding protein.
 
     0.752
EFL38649.1
Conserved hypothetical protein.
       0.727
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.