Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38654.1Conserved hypothetical protein. (98 aa)    
Predicted Functional Partners:
EFL38653.1
Conserved hypothetical protein; Truncated CDS; unextendable partial coding region.
       0.860
rbpA-2
Membrane-associated GTPase; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.774
EFL42531.1
MerR family transcriptional regulator.
  
     0.772
EFL41732.1
Integral membrane protein.
  
     0.766
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.764
EFL37203.1
Single-strand binding protein.
  
     0.762
EFL41754.1
Integral membrane protein.
  
     0.761
EFL38387.1
Conserved hypothetical protein.
  
     0.756
EFL41843.1
Integral membrane protein.
  
     0.755
EFL41554.1
Conserved hypothetical protein.
  
     0.747
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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