Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFL38704.1Hydrolase. (302 aa)    
Predicted Functional Partners:
EFL38705.1
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
       0.835
EFL38706.1
Conserved hypothetical protein.
       0.735
EFL42962.1
Conserved hypothetical protein.
 
   
 0.728
EFL38707.1
Conserved hypothetical protein.
       0.681
EFL37847.1
Conserved hypothetical protein.
 
   
 0.656
EFL42153.1
ADP-ribosylglycohydrolase.
  
   
 0.611
EFL38859.1
Nitrogen regulatory protein P-II.
    
 
 0.600
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.552
EFL38821.1
Conserved hypothetical protein.
  
     0.511
EFL40815.1
ADP-ribosylglycohydrolase.
      
 0.501
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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