Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38714.1Secreted protein. (405 aa)    
Predicted Functional Partners:
EFL38715.1
Secreted protein.
 
    
0.759
EFL41204.1
M6 family metalloprotease domain-containing protein.
  
     0.755
EFL38239.1
Iron-sulfur protein.
  
     0.724
EFL40210.1
Conserved hypothetical protein.
  
     0.713
EFL39481.1
Membrane protein.
  
     0.709
EFL40779.1
Conserved hypothetical protein.
  
     0.697
EFL38712.1
Conserved hypothetical protein.
       0.691
EFL41674.1
Conserved hypothetical protein.
  
     0.678
EFL42707.1
Integral membrane protein.
  
     0.671
EFL41403.1
Membrane protein.
  
     0.662
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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