Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38756.1Membrane protein. (276 aa)    
Predicted Functional Partners:
EFL41370.1
Cell shape-determining protein MreB.
 
 
 0.905
EFL38754.1
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.903
EFL42871.1
Conserved hypothetical protein.
 
 
 0.855
EFL41372.1
Rod shape-determining protein MreD.
 
  
 0.782
EFL38753.1
Conserved hypothetical protein; Belongs to the CinA family.
  
    0.778
rimO
MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.774
EFL41371.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 
 0.760
EFL38757.1
Cell division protein FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
     
 0.726
EFL37832.1
Transferase.
  
    0.683
EFL37835.1
Transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.683
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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