Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38772.1Conserved hypothetical protein. (623 aa)    
Predicted Functional Partners:
EFL37557.1
Integral membrane protein.
  
 
 0.850
EFL39407.1
Integral membrane protein.
    
 0.751
EFL37927.1
Hypothetical membrane protein.
 
  
 0.701
EFL43409.1
Conserved hypothetical protein.
  
  
 0.661
EFL39408.1
Type II/IV secretion system protein.
  
 
  0.604
EFL39838.1
Type II/IV secretion system protein.
  
 
  0.604
EFL40053.1
Pilus assembly protein CpaF.
  
 
  0.604
EFL38788.1
GNAT family acetyltransferase.
  
     0.553
EFL38774.1
ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.
       0.552
EFL39406.1
Integral membrane protein.
  
 
 0.539
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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