Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL38775.1 | EFL38898.1 | SSRG_01579 | SSRG_01702 | Riboflavin biosynthesis protein RibF. | Hydrolase. | 0.779 |
EFL38775.1 | EFL39362.1 | SSRG_01579 | SSRG_02166 | Riboflavin biosynthesis protein RibF. | Nitroreductase. | 0.821 |
EFL38775.1 | EFL39909.1 | SSRG_01579 | SSRG_02713 | Riboflavin biosynthesis protein RibF. | FMN reductase. | 0.904 |
EFL38775.1 | EFL40561.1 | SSRG_01579 | SSRG_03365 | Riboflavin biosynthesis protein RibF. | Riboflavin/cytosine deaminase. | 0.842 |
EFL38775.1 | EFL42479.1 | SSRG_01579 | SSRG_05283 | Riboflavin biosynthesis protein RibF. | Riboflavin synthase, alpha subunit. | 0.931 |
EFL38775.1 | EFL42807.1 | SSRG_01579 | SSRG_05611 | Riboflavin biosynthesis protein RibF. | FMN reductase. | 0.904 |
EFL38775.1 | rbfA | SSRG_01579 | SSRG_01582 | Riboflavin biosynthesis protein RibF. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.834 |
EFL38775.1 | ribBA | SSRG_01579 | SSRG_05284 | Riboflavin biosynthesis protein RibF. | 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.905 |
EFL38775.1 | ribH | SSRG_01579 | SSRG_05285 | Riboflavin biosynthesis protein RibF. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.965 |
EFL38775.1 | truB | SSRG_01579 | SSRG_01581 | Riboflavin biosynthesis protein RibF. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.891 |
EFL38898.1 | EFL38775.1 | SSRG_01702 | SSRG_01579 | Hydrolase. | Riboflavin biosynthesis protein RibF. | 0.779 |
EFL38898.1 | EFL39909.1 | SSRG_01702 | SSRG_02713 | Hydrolase. | FMN reductase. | 0.715 |
EFL38898.1 | EFL40561.1 | SSRG_01702 | SSRG_03365 | Hydrolase. | Riboflavin/cytosine deaminase. | 0.914 |
EFL38898.1 | EFL42479.1 | SSRG_01702 | SSRG_05283 | Hydrolase. | Riboflavin synthase, alpha subunit. | 0.732 |
EFL38898.1 | EFL42807.1 | SSRG_01702 | SSRG_05611 | Hydrolase. | FMN reductase. | 0.715 |
EFL38898.1 | ribBA | SSRG_01702 | SSRG_05284 | Hydrolase. | 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.476 |
EFL38898.1 | ribH | SSRG_01702 | SSRG_05285 | Hydrolase. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.743 |
EFL39362.1 | EFL38775.1 | SSRG_02166 | SSRG_01579 | Nitroreductase. | Riboflavin biosynthesis protein RibF. | 0.821 |
EFL39362.1 | EFL39909.1 | SSRG_02166 | SSRG_02713 | Nitroreductase. | FMN reductase. | 0.826 |
EFL39362.1 | EFL42807.1 | SSRG_02166 | SSRG_05611 | Nitroreductase. | FMN reductase. | 0.689 |
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