STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38794.1ABC transporter, ATP-binding protein. (85 aa)    
Predicted Functional Partners:
EFL38796.1
ABC transporter, permease.
 
 0.883
EFL38825.1
ABC transporter, ATP binding protein.
  
     0.771
EFL42385.1
Sulfate transport system ATP-binding protein.
  
     0.770
EFL40951.1
ABC lipoprotein transporter, permease component.
  
  0.756
EFL41980.1
Integral membrane.
  
  0.756
EFL42613.1
ABC transporter integral membrane protein.
  
  0.756
EFL38635.1
Ferric citrate transport system ATP-binding protein.
 
     0.755
EFL40339.1
ABC transporter, ATP-binding protein; Truncated CDS.
  
     0.755
EFL37334.1
ABC transporter, ATP-binding protein; Truncated CDS.
  
     0.719
EFL37944.1
Translation elongation factor G; Overlaps another CDS with the same product name.
  
     0.711
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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