STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38796.1ABC transporter, permease. (282 aa)    
Predicted Functional Partners:
EFL38795.1
Sensor kinase, two-component system.
 
    0.922
EFL38794.1
ABC transporter, ATP-binding protein.
 
 0.883
EFL38797.1
Two-component system response regulator.
 
     0.838
EFL43051.1
Membrane protein.
  
  
 0.794
EFL38593.1
ABC transporter, ATP-binding protein.
  
 0.755
EFL38648.1
ABC transporter, ATP-binding protein.
  
 0.755
EFL39382.1
Lipoprotein-releasing system ATP-binding protein LolD.
  
 0.755
EFL39487.1
ABC transporter, ATP-binding protein.
  
 0.755
EFL40339.1
ABC transporter, ATP-binding protein; Truncated CDS.
  
 0.755
EFL40950.1
ABC transporter, ATP-binding protein.
  
 0.755
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.