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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38807.1Helix-turn-helix, Fis-type. (518 aa)    
Predicted Functional Partners:
EFL38808.1
ATP/GTP-binding protein.
       0.766
EFL38806.1
Succinate-semialdehyde dehydrogenase.
       0.761
EFL38809.1
4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.698
EFL38793.1
acyl-CoA dehydrogenase.
       0.497
EFL40457.1
N- superfamily bifunctional DNA primase/polymerase.
  
     0.495
EFL42546.1
Integral membrane protein.
  
     0.485
EFL42729.1
Conserved hypothetical protein.
  
     0.483
EFL39675.1
Membrane protein.
  
    0.433
EFL41595.1
Integral membrane protein.
  
     0.418
EFL42016.1
Conserved hypothetical protein.
  
     0.401
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.