STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38823.1AsnC family transcriptional regulator. (172 aa)    
Predicted Functional Partners:
EFL38824.1
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.964
EFL38822.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
    0.793
EFL38815.1
ABC-transporter polyamine-binding lipoprotein.
 
     0.784
EFL38825.1
ABC transporter, ATP binding protein.
     
 0.766
EFL38811.1
Oxidoreductase; Unextendable partial coding region.
 
   
 0.736
EFL38826.1
Integral membrane protein.
       0.729
EFL38827.1
Glyoxalase.
     
 0.717
EFL38821.1
Conserved hypothetical protein.
       0.693
EFL42362.1
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.664
EFL38828.1
Conserved hypothetical protein.
       0.654
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.