STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38827.1Glyoxalase. (135 aa)    
Predicted Functional Partners:
EFL38825.1
ABC transporter, ATP binding protein.
     
 0.853
EFL38828.1
Conserved hypothetical protein.
       0.808
EFL38826.1
Integral membrane protein.
       0.759
EFL38823.1
AsnC family transcriptional regulator.
     
 0.717
EFL38822.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.712
EFL38829.1
Membrane protein.
       0.710
EFL38824.1
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.675
EFL37676.1
3-demethylubiquinone-9 3-methyltransferase domain-containing protein.
 
     0.616
EFL43442.1
PhnB protein.
 
     0.560
EFL39648.1
RNA polymerase sigma-70 factor, ECF subfamily; Truncated CDS; Belongs to the sigma-70 factor family.
 
     0.500
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.