Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38830.1Conserved hypothetical protein. (265 aa)    
Predicted Functional Partners:
fbpC
Fe(3+) ions import ATP-binding protein FbpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
       0.876
EFL38832.1
Sulfate transport system permease.
       0.876
EFL38833.1
Solute binding lipoprotein.
       0.876
EFL37885.1
Xre family toxin-antitoxin system, antitoxin component.
   
 
 0.838
rlmN
Cfr family radical SAM enzyme; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.730
EFL41593.1
Conserved hypothetical protein.
 
     0.517
EFL37693.1
Membrane protein.
  
     0.505
EFL41592.1
Methyltransferase type 11.
 
     0.481
EFL40337.1
Conserved hypothetical protein; Unextendable partial coding region.
  
     0.471
EFL40186.1
Conserved hypothetical protein.
  
     0.458
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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