STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38832.1Sulfate transport system permease. (557 aa)    
Predicted Functional Partners:
fbpC
Fe(3+) ions import ATP-binding protein FbpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 0.998
EFL38833.1
Solute binding lipoprotein.
 
 
 0.998
potA
Spermidine/putrescine ABC transporter, ATP-binding component; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.953
EFL38830.1
Conserved hypothetical protein.
       0.876
rlmN
Cfr family radical SAM enzyme; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.732
EFL40676.1
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
    
 0.669
EFL42203.1
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
    
 0.669
EFL42825.1
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
    
 0.669
EFL38812.1
Polyamine ABC-transporter integral membrane protein.
    
  0.636
EFL38835.1
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
       0.552
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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